YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49648319
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.86
Transmembrane Helix	110	137	0.77
Non-Cytoplasmic	138	138	0.36
Transmembrane Helix	139	160	0.72
Cytoplasmic	161	166	0.51
Transmembrane Helix	167	189	0.68
Non-Cytoplasmic	190	204	0.78
Transmembrane Helix	205	225	0.87
Cytoplasmic	226	232	0.85
Transmembrane Helix	233	254	0.89
Non-Cytoplasmic	255	272	0.79
Transmembrane Helix	273	294	0.89
Cytoplasmic	295	313	0.75
Transmembrane Helix	314	336	0.86
Non-Cytoplasmic	337	362	0.90
Transmembrane Helix	363	384	0.88
Cytoplasmic	385	401	0.82
Transmembrane Helix	402	422	0.94
Non-Cytoplasmic	423	430	0.81
Transmembrane Helix	431	453	0.84
Cytoplasmic	454	477	0.87
Transmembrane Helix	478	501	0.82
Non-Cytoplasmic	502	513	0.81
Transmembrane Helix	514	535	0.86
Cytoplasmic	536	592	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHDSELELS DEKVVPSINQ EKHSFFQRHL DNHPRMAQYN SQLQRFLKWI EVPTKEGEIN  60
   61 TFLNNEDLKP VEVARQTWGW KNFVSFWIAD SFNINTWEIA ATGIQLGLTW WQVWLCVWIG 120
  121 YFFCGVFVVL SGRIGAIYHV SFPVAGRSTF GIFGSIWPVI NRVVMACVWY GVQGWLGGQC 180
  181 IQVCLLAIWP SARHMKNGIP GSGTTTFEFL SYFLFWLFSL PFIYIRPHNL RHLFMVKAAI 240
  241 VPVAGISFLV WTCVKAHGIG PIMKQPATVH GSVMGWAFMT AIMNSLSNFA TIIVNAPDFT 300
  301 RFAKEPNAIV LSQLIAVPTA FSLTSFIGII VSSSATVLYD ENIWNPLDVL HKFLEGNKSG 360
  361 SRAGVFFLGF AFAVAQLGTN IAANSLSAGT DMTALLPKYI NIRRGGFICA GIALCICPWH 420
  421 LLSSSSNFTT YLSAYATFLS AIAGCSFSDY YLVRKGYIYV GDLYNASKGS TYMYRYGVNW 480
  481 RAFAAYFCGI AINVVGFADA VSDGGVNETA RKMYQLNFFL GFLVSAISYY GFNWLSPVVG 540
  541 ARETWSEDPN ASAMYDEITT DELSQDSQSY DPEEWDRKIA NDDPVKTTAI IS