YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCB5R_YARLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSSSRQPQ MQSYYAIATV WALIIGAATY YFFSNSKPKA VLQRGDTAFK EFPLIQKTVL  60
   61 SHNSAIYRFG LPRPSHVLGL PIGQHVSLSA NIGGKEVLRS YTPTSSDLYD KGYFDILIKT 120
  121 YPQGNISKYV SELAIGDTMK VRGPKGNFVY NHGLVESFGM VCGGTGITPM YQILRHIAAD 180
  181 PADNTKVNLV YANVNHDDIL LKKELDAIAA ENDNIKIHYV LNNAPEDWTG SVGFVTKEIL 240
  241 EKHCPPPGPN TKLLLCGPPP MISALKKASV ELGYEKARPV SKLEDQVFAF

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	33	0.95
Non-Cytoplasmic	34	290	0.92