YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49647803
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	114	0.99
Transmembrane Helix	115	137	0.87
Non-Cytoplasmic	138	144	0.67
Transmembrane Helix	145	179	0.70
Cytoplasmic	180	190	0.59
Transmembrane Helix	191	210	0.71
Non-Cytoplasmic	211	225	0.77
Transmembrane Helix	226	246	0.94
Cytoplasmic	247	255	0.87
Transmembrane Helix	256	279	0.90
Non-Cytoplasmic	280	300	0.92
Transmembrane Helix	301	324	0.88
Cytoplasmic	325	344	0.91
Transmembrane Helix	345	366	0.94
Non-Cytoplasmic	367	399	0.92
Transmembrane Helix	400	421	0.84
Cytoplasmic	422	446	0.88
Transmembrane Helix	447	467	0.95
Non-Cytoplasmic	468	475	0.86
Transmembrane Helix	476	497	0.95
Cytoplasmic	498	517	0.90
Transmembrane Helix	518	541	0.92
Non-Cytoplasmic	542	555	0.91
Transmembrane Helix	556	576	0.91
Cytoplasmic	577	626	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMLNRTRKG SGLHGSDRWL VYKSKLGDRC GQSLRLHYSI SMEKDYSDTP ESAEFTETHT  60
   61 GQVETAHMSK WQRFKYGFGP ADISHIDTEG LTPMEITALK TANSPLQRGL KGRHLQMIAI 120
  121 GGSIGTGLFV GSGSTLANGG PAALLIAYGI IGIMLLLTMH ALGELAVCFP VSGGFCTYFT 180
  181 RFIDTAWGFA MAWNYVMNWF VVLPLELVAA SMTVNFWNEM NGTHINAAAW VSVFWAVITC 240
  241 INLFGVKGYG EAEFVFSIIK VVAIVGFVIF GIVMACGGGP ERGDFHHYMG GTLWQHPGAF 300
  301 AHGFKGVCAV FVTAAFAFAG TELCGLAAAE TENPRKMLPR ATKQVFWRIC LFYIVSLTIV 360
  361 GLLVPWNNDQ LLNGSSSADA AASPFVIAIR LAGVKGLPSV MNVVIMISVL SVGNASVYGF 420
  421 SRTMAAMGES GQAPKIFAYI DREGRPIFGI LVVLAFGLFS FIAAAGAETR NEVFNWLLAL 480
  481 SGLSSVFVWG SICLAHIRFR LALKYRGRGT DELTFRAAFG VWGSVLGLIL NCLVLMAQFW 540
  541 IALYPLGAKT PNASDFFQAY LAAPVVIAFW IFWKVWKRDG FLGLKDLDID TGRREMDLDK 600
  601 VRAEMAIEDE ELSRRSFLYR TYNFWC