YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49647791
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.98
Transmembrane Helix	95	112	0.87
Non-Cytoplasmic	113	139	0.85
Transmembrane Helix	140	158	0.88
Cytoplasmic	159	165	0.78
Transmembrane Helix	166	184	0.93
Non-Cytoplasmic	185	190	0.72
Transmembrane Helix	191	215	0.85
Cytoplasmic	216	224	0.89
Transmembrane Helix	225	246	0.94
Non-Cytoplasmic	247	253	0.85
Transmembrane Helix	254	278	0.89
Cytoplasmic	279	326	0.97
Transmembrane Helix	327	346	0.80
Non-Cytoplasmic	347	363	0.71
Transmembrane Helix	364	384	0.79
Cytoplasmic	385	390	0.86
Transmembrane Helix	391	411	0.94
Non-Cytoplasmic	412	418	0.79
Transmembrane Helix	419	440	0.92
Cytoplasmic	441	449	0.83
Transmembrane Helix	450	471	0.89
Non-Cytoplasmic	472	483	0.79
Transmembrane Helix	484	503	0.95
Cytoplasmic	504	543	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNNNIDIE KLPSVDGGEG DITAVNEVRT SINDDTERTE SPENVTSSSH KENLDTVQLE  60
   61 KPLPDDSPKS SSEAQIIEVP YTLDKATDRR LLRKIDMYMM PIMMMIYAVQ YMDKSTNSTA 120
  121 SVMGLRDDLG MEGDDYSWSG TAFYLGYLIF EFPSVYLLQH FPLSKTLSGF IILWGIVLCL 180
  181 HAAPNYPGFI ALRTILGMLE SAVTPAFVVL TAQWYKREEQ FLRTAIWLGS NGLGLLVGSF 240
  241 MAYGLAVNHH VPIAGWRLIF IITGVITIVV GIVFSVHVPD DPSKAWFLTE EERKLVLIRI 300
  301 RDNQQGFENK KFKKDQFFEA FRDYRTWIYF FFCLCQNIPN GGITNFNTIL FSETLGLGPV 360
  361 RGLLLQTPQG ATEFVGCILF GIIAQYTQQR LIVSLVAQAI AFMAICLLAF MPHNQSAGLA 420
  421 GLYLLILYPL GFICMLSSVA SNTAGHTKKV TVNAILLIGY CVGNIIGPQT FRAKDAPMYV 480
  481 PAKVSMVVLF CVAMGLNGIL LWVNIVENRW RDKNEPTPTP EELERVQLMD LTDKQNRYFR 540
  541 YAV