YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG27_YARLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSAIIGYMA VAVAAASCQF TVDSKNYDLS AISGPKSVEY TIETPPSKRK MEFVLDPCAS  60
   61 LKQDKKKPAD EQCPDNTIVC GLGYILLPKE KDFVLSEVMP FGNGPAPQYQ PLKTGPEGTE 120
  121 GLSTSYGNPW GSEKLDIDVN YICSDKEEGP KLENVGLGLN NYYEINWKTP AACINDGSKP 180
  181 KQPVKEPGKT PNDGDDASNG NPSWGWFTWL FIIIVLGVAV YIIGNAWINY DRYGNAGVDL 240
  241 LPHADSLRDV PYLIRDLIAK VVGTFTGSSR TGYSAV

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	204	0.97
Transmembrane Helix	205	227	0.87
Cytoplasmic	228	276	0.93