YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ROT1_YARLI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSTISAFV TSALLATVGH TQSDSSSVDD LEGTWSSKSG AVITGPDFYD PIDELLLEPT  60
   61 LPGISYSFTK DGFFEEAIYQ VSANPKDPKC PTGVLIFQHG TYNISDNGTL TLEPYMVDGR 120
  121 QLLSDPCKQE ENAVYSRYNQ TEKFKRFSVY VDPYHGRYRL DLFQFNGAPM PPMYLAYRPA 180
  181 MMLPTVTLNP TQEASQPENT GSTRAKIRRS IDNRKVTGIK KHSVVDYNSL WWFGVSMIAA 240
  241 GGAGWYFL

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	248	0.95