YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ISPH_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATITTQLRS ALLSPAASPS RRARRAPSSV RCDSSAASSL SASASLDADF DKKQFRHNLT  60
   61 RSDNYNRKGF GHKKETLELM SQEYTSDVIK TLKENGNQHT WGPVTVKLAE AYGFCWGVER 120
  121 AVQIAYEARK QFPDDRIWLT NEIIHNPTVN KRLEDMGVQN IPVDAGIKDF DVVEQGDVVV 180
  181 LPAFGAAVEE MYTLNEKKVQ IVDTTCPWVS KVWNMVEKHK KGDYTSIIHG KYSHEETVAT 240
  241 ASFAGTYIIV KNIAEASYVC DYILGGQLDG SSSTKEEFLE KFKNAVSPGF DPDVDLVKVG 300
  301 IANQTTMLKG ETEEIGKLVE KTMMRRFGVE NVNDHFIAFN TICDATQERQ DAMYQLVKEK 360
  361 VDLILVVGGW NSSNTSHLQE IGELSGIPSY WIDSEQRIGP GNKISYKLNH GELVEKENWL 420
  421 PEGPITIGVT SGASTPDKVV EDALQKVFEI KRQEVLQAA

Type	Start	End	Confidence
Signal Peptide	1	23	0.92
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	459	0.98