YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50540680, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	121	0.85
Transmembrane Helix	122	145	0.83
Non-Cytoplasmic	146	165	0.83
Transmembrane Helix	166	187	0.85
Cytoplasmic	188	208	0.93
Transmembrane Helix	209	231	0.91
Non-Cytoplasmic	232	237	0.83
Transmembrane Helix	238	259	0.90
Cytoplasmic	260	358	0.97
Transmembrane Helix	359	379	0.88
Non-Cytoplasmic	380	400	0.83
Transmembrane Helix	401	420	0.84
Cytoplasmic	421	436	0.84
Transmembrane Helix	437	457	0.89
Non-Cytoplasmic	458	484	0.88
Transmembrane Helix	485	507	0.85
Cytoplasmic	508	522	0.85
Transmembrane Helix	523	544	0.91
Non-Cytoplasmic	545	563	0.93
Transmembrane Helix	564	584	0.95
Cytoplasmic	585	593	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVTVVRAE REEESTLEQG LLAIPEESNQ LTYTGDGSVD FSGNPVVKER TGRWRACPFI  60
   61 LGNECCERLA YYGISTNLVT YLTKKLHDGN ASAASNVTAW QGTCYLTPLI GAILADAYWG 120
  121 RYWTIATFST IYFIGMAVLT LSASVPTFMP PPCEGSFCPP ANPLQYTVFF LGLYLIALGT 180
  181 GGIKPCVSSF GADQFDDTDP VERIQKGSFF NWFYFSINIG ALISSSFLVW VQDNIGWGIG 240
  241 FGIPTIFMGL AIISFFSGTS LYRFQKPGGS PITRVCQVVV ASFRKWNVHV PEDSSRLYEL 300
  301 PDGASAIEGS RQLEHTDELR CLDKAATITD LDVKADSFTN PWRICTVTQV EELKILVRMF 360
  361 PVWATTIVFS AVYAQMSTMF VEQGMMLDTS VGPFKIPPAS LSTFDVVSVI IWVPLYDSIL 420
  421 VPIARRFTGN PRGFTELQRM GIGLVISIFS MAAAAVLEIK RLDIARAEHL VDQNVPVPLN 480
  481 ICWQIPQYFL VGASEVFTFV GSLEFFYDQS PDAMRSLCSA LQLVTTALGN YLSAFILTLV 540
  541 AYFTTRGGNP GWIPDNLNQG HLDYFFWLLA GLSFLNFVIY VICANKYKSK KAA