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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46486680
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLNLNQDL GNGNSEVVQL AELGDGIVQI TMNDEKNRNS FSKNFIDKLF RCFELVNQNP  60
   61 IYKVVIIAGT SHYFSTGATQ EQLQSIFREE IKFTDFYEIL TLALDCPLPV IAAMEGHALG 120
  121 GGLNLGLYAD FLVLSRESFY ANNLMKYGLT PVGSTSLILP KKLGAELGQE MIYTGRQYRG 180
  181 EELAQRGIPF PVLPRKEVLN SARKLAKEIA EKPRLSLLAL KENLTAEIRT KLPEVVSKEL 240
  241 EMHEKTFQQV KVASQAIHQT TSQPVQLKIA SYGLLKNLTW VSLENQVPGV GEVKVQIQAV 300
  301 PVNFRDILNA LGMLQEHNQT KLGITSVDHL TFGFEAVGVI VGVGLGVSQW QIGDEVMVIG 360
  361 CHDAFSSFII CSPNNLVAKP ANLKLIEAAT IPIPFFTAYH GLYNLAKIQS GERVLIHAAS 420
  421 GGTGQAAIQL AQFWGAEVFA TTSPQKMAVL REQGIKHVMN SRTTEFANEI RELTQGKGVD 480
  481 VIFNSLTHGE YIQKNLDVLA LEGRYIEISK RKIWSHSQVA QKRSDIKYFP FDLLEEFNRD 540
  541 NQLYYQIWKK LIQCFENKEL HPLVYKTFPN EDIVEAFRYL QRSKHIGRVV VTMPEIYSHK 600
  601 ESSSYRLPNQ GQMSQQEEVL QQLQSGEVSL EDAEKLLLEV TGEEVQQKIL FKQINNGQNQ 660
  661 QIKKDKSENI LALLSSGEIS LENAEKLLLE PESTKETEKE TDAITPAQNT DIAIIGISCR 720
  721 YPGAKNYREF WENLQNGVDS VTEPPPGRWE GQNWYHPDPE HPDTSYCKCA GFIDDIDKFD 780
  781 PSFFQISPGE AQFIEPQQRI FLEEAYHAIE DAGYAPDFLK GRQCGVFVGA VKSDYSKLLS 840
  841 DSGLGTHRLA LSGNQLSIVP ARIAYFLDLR GPVMTVETAC SASLVAVHQA CESIKRGESE 900
  901 LALAGGIHTM LTPDFQILSS QFQMVSPAGR CKTFDAEASG TVWSEGCGVL LLKSYEQAIR 960
  961 DQDHIYGVIK GTGINYDGNT NGISAPSSQS QTRLEETVYQ KFGISPETIS YVEAHGTATS1020
 1021 LGDPIEVEAL TETFAQWTNR KQFCAIGSVK TNIGHASTAA GVSGLIKTIL CLKHQKLVPS1080
 1081 LHFNQPNPHI DFANSPFYVN TEFQDWEAQE GKPRRAAVSS FGFSGTNAHI VIEEALREGN1140
 1141 RQQATGNSED YRKGNRQQAT GNSEDYLERP VHLLTLSAKT ETSLAELVRA YQNYLKTYPG1200
 1201 LGLADICYTA NTGRTHFNHR LAVVAADQQE LVEKLQQHQQ GDEVAGIYSG QQEYNTTTAK1260
 1261 IAFLFTGQGS QYVNMGRELY QQAATFREAI NQCDDILKTV ETFRDKSLRE ILYPADDSSD1320
 1321 SSLLNQTAYT QPVLFAIEYA LCQLWKSWGI EPDAVMGHSV GEYVAATVAG VFSLEDGLKL1380
 1381 IAARGRLMQQ LPAGGEMVSV MANEAKILET LNAMSRSDKV AIAAINGPQS IVISGEGEAV1440
 1441 RAIATHLESA GIKTKQLQVS HAFHSALMEP MLAEFEAVAN QITYHQPWIP LISNVTGKLV1500
 1501 DTGITSAEYW VNHVRQPVRF AQSMTTLDQE GYELFLEIGP KPILLGMGKQ CLPEEVGVWL1560
 1561 SSLRPGVEEW QQMLSSLGQL YVEGTKVDWL GFEQDYACQK VALPTYPFQR ERYWLETNNG1620
 1621 LPKKQYLSTS QNIHPLLGQK LNCASEQQIF QSVLGEGSPA YLSQHRVFDQ ALFPTTAYLE1680
 1681 MATAAGNYQL KTSHLVVEDF LIRQGCILPP GELVSAQTIL TPADNQGYQF QIFTQQEQKK1740
 1741 QEEQKWVLHA TGKIRSDQTE TTPTPVDLEK YQRECNHSIE ISQHYQQCRQ IGIDYGSSFQ1800
 1801 GIQKLWSGSN QALAEIKLPE ELLGETIDYQ FHPALLDAAL QVTFSALPQT DSDKTYLPVG1860
 1861 IEQFKVYRSP GLSLWAYASV MTPVEESQES LTTQVTLVSP SGEIIATVKG LQVKLATQQT1920
 1921 LLKTEVESIT NWLYGVEWRN KGRLGRLLPP DFLLAPVEVS QQLTPSLAEL VTQVDNARTA1980
 1981 EIGKSIEALS VDYIVQALSS MGWSYQPTES FDLQAAVQRL AIVPSQRRLF QRLLEILAEV2040
 2041 GILQSQQQRW QVQQTLEKVN PTQKSQSLLS QYPEEAATLT LLDRCASQLS GVLRGAIDPV2100
 2101 QLVFPKGDLT TAAELYKNST VAKVMNTIVQ QTITKAIDKL PPSRGVRLLE IGAGTGGTTN2160
 2161 YILPYLNPNQ TEYIFTDIGA LFTSKAQDKF RDYRFLGYQT LDIEVDPTSQ GLESHQYDVI2220
 2221 IAANVLHATT SLKQTLSHVR QLLAPGGMLV LYEATTRTRW VDLIFGLLEG WWKFSDYELR2280
 2281 PDYPLLSRQQ WKKVLSETGF TQVVTLPEVE GMAKALSEQT VIVAQAATTT LEQTKETSKG2340
 2341 WLILADTQGI AQHLASQLRS VGDVCTLVFA GESYQQLAPE EFTINPDNLS EFEQLIETLT2400
 2401 AKSPSLSGVV QCWTTEAGLG KTINSEELEN LSRLGCGTTL SLVKALVKAG LSQSPRLWLV2460
 2461 TNGAQPVPSN HPVIPGVAQS SVWGMGKVIS LEHPELNCTR IDLDPEETIE GQADALFNEI2520
 2521 WSEDSEDQVA WRGDGRYVAR LVGSRHRQPV TQQLVPSQPF KLGSSEKGSL DNLILEPVTR2580
 2581 RSPGAGEVEI RVKATGLNFL DVVSALGLVP EQVDGMSQKH LVEMDSFGAE CAGEVVAVGS2640
 2641 EVTGFHIGDT VMAMAHGSFS QYVTVDATYV VIKPENLSFE EAASIPANFL TAYYALHHVA2700
 2701 KIQAGDRILI HAGAGGTGMA AVQIAQQAGA EVLATASPPK WEALRNLGVK HIMNSRTLEF2760
 2761 ADQVMEITQG QGVDVVLNSL TSGEFISKGL SVVSSGGRFV EISKRGVWDS SQVAALRPDV2820
 2821 SYFVVDLVKE SIEQPGLINS MLQGLKDKLS NGLLQPPPIK VFPIEEVIDA FRYMQQAKHI2880
 2881 GKIVVSQTQL ADGTTQKPLS FRSGASYLIT GGMGGLGLLV ANWMVSKGAK HLVLLGRRSP2940
 2941 DDATRKKITE LEMAGAEVVV EKADVSDLES MTRVLHKIEQ SNIPLTGVIH SAGMLSDGVL3000
 3001 QNQSWSSFEQ VMDPKVQGAW HLHQLTKNKP LDFFVLFSSV ASLFGSPGQG NHSAANGFLD3060
 3061 GLAHYRRGMG LSGLSIHWGA VAQVGEAAER GADMRASKQG MGVISPTQVL ESLELLMSGE3120
 3121 DVEVGVVPLE WSAWQERLAQ WPFLADWQET IQTTSETSKS EFLLKLEATA PNERRSLLVA3180
 3181 HVRRQLALVL GINNPESIAL ATGFFDLGMD SLSSVELRNK LQNSLDYSLP SSLAFDYPTV3240
 3241 EKLVDYLVGK VVAKESYDTL VPKPTENKND QKQEKLLADT KELSEEQLEE LINQELNLII3300
 3301 NE

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