YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50345961
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEEDVRV GANKFNERQP IGTAAQSQDK DYKEPPPAPL FDPGELSSWS FYRAGIAEFI  60
   61 ATFLFLYIAI LTVMGVSKSD SKCSTVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLARKLSL TRAIFYMVMQ CLGAICGAGV VKGFGKTLYM TKGGGANVVA PGYTKGDGLG 180
  181 AEIVGTFVLV YTVFSATDAK RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD HAWDDHWIFW VGPFIGAALA ALYHVVVIRA IPFKNK

Type	Start	End	Confidence
Cytoplasmic	1	53	0.85
Transmembrane Helix	54	76	0.85
Non-Cytoplasmic	77	90	0.80
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	132	0.70
Transmembrane Helix	133	155	0.89
Non-Cytoplasmic	156	177	0.86
Transmembrane Helix	178	197	0.86
Cytoplasmic	198	207	0.89
Transmembrane Helix	208	228	0.90
Non-Cytoplasmic	229	256	0.89
Transmembrane Helix	257	278	0.92
Cytoplasmic	279	286	0.87