YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49657519, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.99
Transmembrane Helix	88	109	0.92
Non-Cytoplasmic	110	116	0.84
Transmembrane Helix	117	141	0.77
Cytoplasmic	142	158	0.60
Transmembrane Helix	159	183	0.67
Non-Cytoplasmic	184	197	0.80
Transmembrane Helix	198	218	0.92
Cytoplasmic	219	226	0.83
Transmembrane Helix	227	250	0.89
Non-Cytoplasmic	251	267	0.93
Transmembrane Helix	268	291	0.86
Cytoplasmic	292	309	0.91
Transmembrane Helix	310	330	0.95
Non-Cytoplasmic	331	357	0.93
Transmembrane Helix	358	382	0.79
Cytoplasmic	383	406	0.91
Transmembrane Helix	407	428	0.92
Non-Cytoplasmic	429	437	0.82
Transmembrane Helix	438	459	0.92
Cytoplasmic	460	482	0.90
Transmembrane Helix	483	504	0.89
Non-Cytoplasmic	505	516	0.78
Transmembrane Helix	517	537	0.92
Cytoplasmic	538	589	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNSKVSRE KSHSFSEVDH IRSGSLESTG NGGIWQSFKN SFKPAEQSRT LTLKDISEEE  60
   61 EAKLTNVERA ALRSANSQLS RSLKSRHLQM IAIGSSIGTG LFVGSGGALR DGGPAGLIIA 120
  121 WTVISTGVFA TVQGLGELSV ALPVSGGFNI YATRFIEPAV GFAIGWNYFM QFFVLLPLEL 180
  181 VAASITIKYW NSDLNSDIFV AIFWVSVVFI TMLGVKGYGE AEFVFSLVKV VAIIGFIILS 240
  241 IVLICGGGPT HEFVGGSNWR EPGPFANGFK GVCSVFVTAA FSFGGTEMIG LTAAETANPR 300
  301 KTLPKAIKQV FWRICLFYLL SLTMIGTLVS YKDESLIGAS DVDATASPFV IAIRNGGIGG 360
  361 LPSVINAVIL IAVLSVGNSS VYATSRSLNS LAEQGMAPKW TGYVDRAGRP LVAILITNVF 420
  421 GLFAFIAASD KQVEAFDWLL ALSGLSSIFT WISINVAHIR FRRAMSYQGR TTAELPYVSQ 480
  481 CGVWGSYYAL LLNCLVLIAQ FWIALFPLGG SPNAYDFFLS YLGLPVILMS WLGYKLWKKD 540
  541 WTLFIRAKNL DIDTGRINID IDVLQQEIAE EKAQLAEKPF FVRFYKFWC