YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13477083
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILFSRFSF LLLFLCSWTN LSNTEAYDAL DPYGNITIKW DIMSWTGDGY VAVVTIFNFQ  60
   61 QYRHIEAPGW QLGWSWMKKE VIWSMVGGQA TEQGDCSKFK GNIPHCCKKT PAIVDLLPGT 120
  121 PYNQQISNCC RGGVISAWAQ DPATAISSFQ ISVGQSGTTN TTVRAPRNIT LKAPGPGYTC 180
  181 GPAKLVKPSR FISADKRRKT QSLLTWNITC TYSQFLARKT PTCCVSLSAF YNETIVPCPT 240
  241 CSCGCQNSSQ AGTCVDCDSP KIASVVPALG KNNLEPLLQC TQHMCPIRVH WHVKTSYKEY 300
  301 WRVKVAITNF NYNMNYSQWN LVVQHPNFDN LTKLFSFNYK PLNPYLNIND TAMLWGIKFY 360
  361 NDFLSQAGPV GNVQSELLFQ KNPLEFTFEK GWAFPRRIYF NGDNCVMPPP DSYPWLPNAS 420
  421 PNIATSPFVI LLITFLSVLI LM

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	422	0.99
Transmembrane Helix	423	441	0.81
Cytoplasmic	442	442	0.85