YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50425927, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.99
Transmembrane Helix	137	158	0.94
Non-Cytoplasmic	159	173	0.92
Transmembrane Helix	174	197	0.90
Cytoplasmic	198	205	0.89
Transmembrane Helix	206	227	0.91
Non-Cytoplasmic	228	234	0.74
Transmembrane Helix	235	256	0.89
Cytoplasmic	257	263	0.88
Transmembrane Helix	264	286	0.91
Non-Cytoplasmic	287	294	0.88
Transmembrane Helix	295	316	0.92
Cytoplasmic	317	368	0.94
Transmembrane Helix	369	390	0.91
Non-Cytoplasmic	391	406	0.89
Transmembrane Helix	407	429	0.93
Cytoplasmic	430	449	0.96
Transmembrane Helix	450	471	0.94
Non-Cytoplasmic	472	477	0.82
Transmembrane Helix	478	500	0.89
Cytoplasmic	501	519	0.84
Transmembrane Helix	520	539	0.87
Non-Cytoplasmic	540	545	0.78
Transmembrane Helix	546	568	0.90
Cytoplasmic	569	593	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSEFHDNN STTIDDASIS SEKVNRFEGN DVQPNSLKNR SRSNSRGEDK ESLERLITNN  60
   61 RGVERIITEL EAGAGKLGDL EEPYDIKKIE THPDPNSTLN EQDPWKYPID QETGLRLVEF 120
  121 VPGDEKNPMN KSNPLKWCYT AVLGAICFVV ALGSAIVTGD IGGQVEYFQV SEEVVILATV 180
  181 TMFVLGFGFG PCVFAPVSEE LGRQPVYVVT LFLGLVFIIP CALAKNIGTM IVCRLIDGLA 240
  241 FSAPMCLIGG SLADIWDAKE RGAAMAIFSA APFLGPVMGP IFGGLLGDYA DTWRWIYWTF 300
  301 LIIAGFFYII FVAVLPETHH QTLLKRRAKK LRKDTGDDRY RAISELKIKT FKQVCNDSFL 360
  361 RPFILLSELI VFLMTLYMSV IYGLLYMFFF AYPIVFGEGK GWSDSKIGIM FIPIGVGVLI 420
  421 ATACAPLINK DYNKRAQVYR DRGELPPPEL RLIPMMISCW FVPASLFSFA WSSYPSISWA 480
  481 GPCFSGIGAG FGFCCLYNPA NNYIVDSYQH YAASGLAAKT LVRSIWGACV PLFTIQMYHR 540
  541 LGYQWASSLM AFISLACCAI PYGFYFYGAK IRTYSKYAYT PEDTGVKDSE NQK