YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50425327, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTQATIAA FAALSTVTLA APAPAQDEDC ATTQVHAHHK HKREVVYDYA YVTVTVDGNG  60
   61 KAVEGTATSL STATSATQES ESTSTTSIAS TTSVEESSSA ATSEASSTES SSSSAASSSS 120
  121 SASTGSSGSS GSVPTGDLSA FEDPSEDFED GTISCSDFPS GQGVVSLDHL GFGGWSGVEN 180
  181 SDGSTGGNCK EGAYCSYACQ SGMSKTQWPS NQPLNGVSIG GLLCKGGKLY RSNKDQNTLC 240
  241 AWDENKASVV NNLSKTVAIC RTDYPGTENM VIPTVVDGGS SSPISVVDQS TYYKWKGGST 300
  301 SAQYYVNNAG VDWTDGCVWG TSGSGIGNWA PLNFGAGYDN GIAYLSLIPN PNNKDSLNFK 360
  361 VKIVADGDST VSGDCTYENG KYNGDGTDGC TVGVTNGKGK FVLY

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	404	0.99