YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAM17_DEBHA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKNIGIYNR LINTIGRSVR FNSSGKSSLN WVEYLNLKKQ NNRLNVASSA FTSLAGAFIT  60
   61 LTYLGNIEIQ VDKPIMGLDP FMVMGGAVIL GGGVGYLFGP FIGTALFSLK NKAAMHQFKI 120
  121 KDQIFLQKIK HHRVDPSSQS FSNPVPDYYG ERIYSLNNYK QWLRDCNAFR RKAKEFL

Type	Start	End	Confidence
Cytoplasmic	1	43	0.98
Transmembrane Helix	44	65	0.90
Non-Cytoplasmic	66	84	0.85
Transmembrane Helix	85	107	0.91
Cytoplasmic	108	177	0.98