YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PBN1_DEBHA
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQRTTIFN PTKSNDGIIE AVDSSHLQLS SIDYQCEDKF ILQTPKFKYI DKLRIQLNQF  60
   61 HSELILFSKY QAGLNIYCKP KIGDEGFNQE EFFNELNQMM TNLFDIPRDG WINSLDTLFY 120
  121 HEPSTGSESF IEYVRKLTGN ELNVNLEVLP NIEYVYDGEK VVLKLNGKSL ANTTITKNSK 180
  181 FNKEIGLFLI EKGISSEDDI VLSGLRVILN GDDDKNEEYL QKTLFHVKRR QRQSRGTYSS 240
  241 QVKENGMHPF LKTDIHSDIP NDEDLIQCKL YYYLDLNKSF FVDKYQLPKE FTSYVNFGNT 300
  301 DLELPEYKIN EWGSEILMEI ENNQQISLPL HSRYQLPNNE SSIRVTGIND PLIFYGCDVK 360
  361 DSYLLESSPF DNRLDIGGNY ERFFTDNTVF YHLLSHENQL QINIPRGNEL IKKINFVTNL 420
  421 IFIAGVVLIF YKIVQGIFKR NPSAGTRKNE

Type	Start	End	Confidence
Non-Cytoplasmic	1	415	0.83
Transmembrane Helix	416	434	0.79
Cytoplasmic	435	450	0.62