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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49656745, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGSLSSAG RETKDINSQY ELTDSSENNE IHEYEGFDNT ATGDIRELAR TVSHISREQT  60
   61 NKTSDSEDIV RYLSHFSSIP GVEPYTEAED TLNPDSDLFD ARLWVKNLRK LHDSDVEYFK 120
  121 PSSLGVAYRN LRACGVAADS DYQPTVLNGI TKYLTDGFRY LQKDDPSRYF DILKSMDGIM 180
  181 RPGEVTVVLG RPGSGCSTLL KTIASHTYGF KIGEESKISY DGLTPKDIEN QFRGDVVYSA 240
  241 ETDTHFPHLT VGDTLEFAAK MRTPQNRGNV DRETYAKHMA SVYMATYGLS HTRNTNVGDD 300
  301 FVRGVSGGER KRVSIAEVSL CGSNIQCWDN ATRGLDSATA LEFIRALKTS ATILDATPLI 360
  361 AIYQCSQDAY DLFDNVVVLY EGHQIFFGKA DEAKEYFINM GWECPQRQTT ADFLTSLTNP 420
  421 AERVPRPGFE NSVPYTPKEF ETHWKNSPQY KKLVEDVEEY FQKTDSGNHG EEYHKAHVAR 480
  481 QSNHISPKSS FTVSFFMQTR YIMGRNILRT KRNPSVAIQS IAGQAFIGIT LGSMFYNLSA 540
  541 TTETLYYRCA TLFGAVLFNA FSSILEIMSL FEARPIIEKH KQYALYRPSA DALAGIITEL 600
  601 PTKLALSIAF NFFIYFLSNL RRDAGRFFFF WLMCCMCTLV MSHLFRSLGA ISTSFAGAMT 660
  661 PATVLLLAMV IFAGFVLPTP SMLGWSRWIN YLNPIAYVFE ALMANEYTDR DFECSQFVPS 720
  721 GPGYEDRNSV HRICAATGSK AGSDVLHGDD YLSVSYEYYN FHKWRNFGIT VGFIIFFLFV 780
  781 YITLTEFNKG SMQKGEVALF LKSSLTDQKK KSGKSETTSK DIENSAIPDE KISQKDQLEA 840
  841 NKETETAEKA LPSSNDIFHW RDLTYQVKIK SEDRVILNHV DGWVKPGQLT ALMGSSGAGK 900
  901 TTLLNCLSER VTTGVISDGV RMVNGHSLDS SFQRSIGYVQ QQDLHLPTST VREALRFSAQ 960
  961 LRQPNSVTTK EKNDYVEYII DLLDMYPYAD ALVGVAGEGL NVEQRKRLTI GVELVAKPKL1020
 1021 LLFLDEPTSG LDSQTAWSIC KLMRKLADHG QAILCTIHQP SALLLQEFDR LLFLQKGGKT1080
 1081 VYFGDLGENC QTLINYFEKY GAHHCPEEAN PAEWMLEVVG AAPGSHANQD YHEVWKNSTE1140
 1141 FQTVKDELAN METELVSLPR DESPEAKKSY ATPIWKQYLI VTKRVFEQNW RSPIYIYSKV1200
 1201 FLVVSSALFN GFSFFKADRS QQGLQNQMFA VFMFLVPFNT LVQQILPGFV KQRDVYEVRE1260
 1261 SPSKTFSWFA FITAQITSEI PYQVLVGTIA FLCWYYPVGF YENSVPTNTV DGRAVTMWLY1320
 1321 ITAFYVYTST MAHVCISFNE LADNAANLAI NFFTMCLHFC GVLISPEAMP GFWVFMYRVS1380
 1381 PLTYVVQGMM STGLANNGLQ CSSKELLRFE PTSGNTCGEY MSDYISQAGG YLVDSYATSE1440
 1441 CEYCTMNSTN DWLATFNAYY SERWRNWGIF LCYIAFNMII TVFLYWLARV PKGNREKKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle