YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49656744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	516	0.85
Transmembrane Helix	517	539	0.87
Cytoplasmic	540	545	0.64
Transmembrane Helix	546	568	0.85
Non-Cytoplasmic	569	600	0.61
Transmembrane Helix	601	619	0.71
Cytoplasmic	620	627	0.80
Transmembrane Helix	628	648	0.94
Non-Cytoplasmic	649	657	0.72
Transmembrane Helix	658	680	0.89
Cytoplasmic	681	764	0.84
Transmembrane Helix	765	785	0.90
Non-Cytoplasmic	786	1195	0.85
Transmembrane Helix	1196	1216	0.82
Cytoplasmic	1217	1228	0.56
Transmembrane Helix	1229	1247	0.77
Non-Cytoplasmic	1248	1280	0.56
Transmembrane Helix	1281	1301	0.80
Cytoplasmic	1302	1314	0.47
Transmembrane Helix	1315	1337	0.84
Non-Cytoplasmic	1338	1345	0.44
Transmembrane Helix	1346	1370	0.80
Cytoplasmic	1371	1374	0.30
Transmembrane Helix	1375	1389	0.36
Non-Cytoplasmic	1390	1467	0.83
Transmembrane Helix	1468	1489	0.95
Cytoplasmic	1490	1501	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSNSVEH KSKFEDSNSV TEFVPSADQS SVPQYEGFDD ATNDIKELAR TMSNISRQQT  60
   61 NKTKGSEDLI RYLSHMSQVP GVEPYNNEIE DTLNPDSDNF NAKYWVKNLR KLHDSDPNYY 120
  121 KPSSLGIAYR NLRASGVAAD SDYQPTVDNA LYKLGGEAFR SLQKDDPSRY FDILKSMDGI 180
  181 MRPGEVTVVL GRPGSGCSTL LKTIASHTYG FKIGEESKIS YDGLTPKDIE NQFRGDVVYS 240
  241 AETDTHFPHL TVGDTLEFAA KLRTPQNRGN IDRETYAKHM ASVYMATYGL SHTRNTNVGN 300
  301 DFVRGVSGGE RKRVSIAEVS LCGSNIQCWD NATRGLDSAT ALEFIRALKT SATILDATPL 360
  361 IAIYQCSQDA YDLFDNVVVL YEGHQIFFGK ADEAKEYFIN MGWECPQRQT TADFLTSLTN 420
  421 PAERTPRPGF ENSVPYTPKE FETHWKNSPQ YKKLVEDIEE YFQKTDSDSH GEEYHQAHVA 480
  481 RQSNHISPKS PFTVSFFMQT RYIMGRNILR LKGDPSIAIQ SIFGQAVMGL ILSSVFYNLQ 540
  541 PVTDSFYYRG AAMFFAVLFN AFSSLLEIMS LFEARPIVEK HKQYALYRPS ADALAGIITE 600
  601 LPTKLFMSMS FNFVFYFMVH FRRDAGRFFF YWLMCIMCTL VMSHLFRSLG AVSNSLAGAM 660
  661 TPATVLLMAM VIFTGFVIPT PNMLGWSRWI NYINPVAYVF EALMTNEFSG RDFECSQFVP 720
  721 AGPSYQGISP DQRICSTTGS RPGSEVVRGS EYLATSYEYY ASHKWRNFGI TVAFVVFFLF 780
  781 IYISLTEFNK GSMQKGEVAL FLKSSLTDQK KKSGKSETTS KDIENSAIPD EKISQKDQLE 840
  841 ANKETETAEK ALPSSNDIFH WRDLTYQVKI KSEDRVILNH VDGWVKPGQL TALMGSSGAG 900
  901 KTTLLNCLSE RVTTGVISDG VRMVNGHSLD SSFQRSIGYV QQQDLHLPTS TVREALRFSA 960
  961 QLRQPNSVTT KEKNDYVEYI IDLLDMYPYA DALVGVAGEG LNVEQRKRLT IGVELVAKPK1020
 1021 LLLFLDEPTS GLDSQTAWSI CKLMRKLADH GQAILCTIHQ PSALLLQEFD RLLFLQKGGK1080
 1081 TVYFGDLGEN CQTLINYFQK YGAHHCPEEA NPAEWMLQVV GAAPGSHANQ DYHEVWRSSS1140
 1141 EYQGTQAELD NMERELVNLP VDESPEAKKS YAAPIWKQYL IVTKRVFQQN WRSPTYIYSK1200
 1201 LFLVVSSALF NGFSFFKADR SMQGLQNQMF AMFMFLIPFN TLVQQMLPYF VKQRDVYEVR1260
 1261 EAPSKTFSWF AFVAAQITSE VPYQIFCGTI AFLCWFYPVG FYQNAVPTNS VDQRAVLMWM1320
 1321 YICSFYVYTS TMGQLCMSFN ELADNAANLA TLLFTMCLNF CGVLAGPDVL PGFWIFMYRC1380
 1381 SPFTYFIQGM LSTGLANTNA ECSKAEFLHF KPNEGQSCGE YMSDYIKQAG GYLVDEKASS1440
 1441 ECQFCPMAST NDFLASVNSF YDERWRNWGI FICFIAINII LTIFFYWLAR VPKGNREKKK1500
 1501 K