YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P2C38_ARATH
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSATILRM VAPCWRRPSV KGDHSTRDAN GRCDGLLWYK DSGNHVAGEF SMSVIQANNL  60
   61 LEDHSKLESG PVSMFDSGPQ ATFVGVYDGH GGPEAARFVN KHLFDNIRKF TSENHGMSAN 120
  121 VITKAFLATE EDFLSLVRRQ WQIKPQIASV GACCLVGIIC SGLLYIANAG DSRVVLGRLE 180
  181 KAFKIVKAVQ LSSEHNASLE SVREELRSLH PNDPQIVVLK HKVWRVKGII QVSRSIGDAY 240
  241 LKKAEFNREP LLAKFRVPEV FHKPILRAEP AITVHKIHPE DQFLIFASDG LWEHLSNQEA 300
  301 VDIVNTCPRN GIARKLIKTA LREAAKKREM RYSDLKKIDR GVRRHFHDDI TVIVVFLDSH 360
  361 LVSRSTSRRP LLSISGGGDL AGPST

Type	Start	End	Confidence
Cytoplasmic	1	146	0.72
Transmembrane Helix	147	167	0.84
Non-Cytoplasmic	168	385	0.85