YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U496H_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLGMFSKTM EDKSNSSRNR TNNTPLPQQI RTDMGSLYSA DLTAYNSACR EDPDLQSFDS  60
   61 SLHQRTNRVI NSLASGAQTR SLSFDALIEV SGCLLEMNQE VVRFIIESKE DVWDNKDLTC 120
  121 LVNAYFDSSI KTLDFCNAVD NCVKRARIGQ MLLQFALKQF EMESSGSNKS VEPGTNKYAK 180
  181 TLEELNKFKA SGDPFDGDFF MLLESVYEQQ VMLLEILHKQ KRKLDKKLKN IKYWKKISNV 240
  241 VFVTAFVSVL IFSVVAAAVA APPVVTALAA ALAVPIGSIG KWCNHLWKKY ETAVKGQKDI 300
  301 VLSMRIGAYV TMKDMDNIRV HVDKLKIEME SMMQKVDFAL KEKEEEVAVR LSMHEISKKF 360
  361 DVFTERIEEV GDNATKCSKN ITLARTIVLR HILSFPSSSD SGQGNLIEAI TL

Type	Start	End	Confidence
Cytoplasmic	1	236	0.98
Transmembrane Helix	237	259	0.90
Non-Cytoplasmic	260	264	0.69
Transmembrane Helix	265	285	0.87
Cytoplasmic	286	412	0.96