YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FACE2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDGESISM SLAVATCVAM ALFYVLILYV PTVILRLPSA SSYTEFMIRR FICAAICTVA  60
   61 SLVFTAFILP IKSWEASYIL GVYGIRKDHL WQGVVYPLLL TSLVYAGSLV LKLFTLLESW 120
  121 KENGGGCSSF NYIRSFFQTI PASVLTSASN VSVWRNFIVA PVTEELVFRS CMIPLLLCAG 180
  181 FRINTAIFLC PVLFSLAHLN HFREMYIRHN RSYLRASLIV GLQLGYTVIF GAYASFLFIR 240
  241 TGHLAAPLFA HIFCNCMGLP VLYANGKGLV SAAFLGGVVG FVLLLFPLTK PLMYNDSTND 300
  301 CPCWLGYCLW N

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.74
Transmembrane Helix	12	30	0.95
Cytoplasmic	31	50	0.71
Transmembrane Helix	51	71	0.94
Non-Cytoplasmic	72	92	0.85
Transmembrane Helix	93	116	0.87
Cytoplasmic	117	134	0.80
Transmembrane Helix	135	154	0.78
Non-Cytoplasmic	155	174	0.77
Transmembrane Helix	175	199	0.82
Cytoplasmic	200	212	0.85
Transmembrane Helix	213	237	0.84
Non-Cytoplasmic	238	243	0.66
Transmembrane Helix	244	263	0.75
Cytoplasmic	264	268	0.60
Transmembrane Helix	269	289	0.90
Non-Cytoplasmic	290	311	0.70