YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49656538
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLCPVYAP FFGSMGCAAA IVFTCFGASY GTAKSGVGIC ATCVLRPDLL VKNIVPVIMA  60
   61 GIIAIYGLVV SVLVTDSLKQ KQALYTGFIQ LGAGLSVGLS GLAAGFAIGI VGDAGVRGTA 120
  121 QQPRLFVGMI LILIFAEVLG LYGLIVALLL NSRATQDVTC

Type	Start	End	Confidence
Cytoplasmic	1	7	0.59
Transmembrane Helix	8	30	0.88
Non-Cytoplasmic	31	53	0.57
Transmembrane Helix	54	75	0.90
Cytoplasmic	76	86	0.52
Transmembrane Helix	87	111	0.86
Non-Cytoplasmic	112	124	0.58
Transmembrane Helix	125	150	0.85
Cytoplasmic	151	160	0.60