YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49656428, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNQRHTLP KGSVDEDYLE KLESNIHDNN HDNYHKSFKP NKHKSLYSRT ESLFRSTLKV  60
   61 IQEVCVRHKK IVIVLITLIC LSLFTSTPFI PHLRSKDPKV VIILAANEGG GVLKWKGPQE 120
  121 WSVERSSIAN KKHYAKVHGY GLTIKDMTLK KRYSHEWRES WEKVDIMKQV MRQYPETEWF 180
  181 WWLDLHTYIM EPETSLEQHF LDNLENATYR SLEAFNPLNL PVDLPYVDYN SPIDMVITQD 240
  241 CGGFNLGSFM LRRSAWSEML LDFWWDPAMY EQMHMAWEHN EQDALETLYT TQSWIRERIG 300
  301 FLPLRKINAF PPGACSEFSN DPRYFYKERD FVINMAGCEW GRDCWGEMEH YKALSKRLHK 360
  361 RWWKFW

Type	Start	End	Confidence
Cytoplasmic	1	70	0.78
Transmembrane Helix	71	90	0.75
Non-Cytoplasmic	91	366	0.98