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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11994361
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRIRSRI RKSHFYTFKC LRPKTLEDQG PHIINGPGYT RIVHCNQPHL HLAKVLRYTS  60
   61 NYVSTTRYNL ITFLPKCLYE QFHRVANFYF LVAAILSVFP LSPFNKWSMI APLIFVVGLS 120
  121 MGKEALEDWR RFMQDVKVNS RKATVHRGDG DFGRRKWKKL RVGDVVKVEK DQFFPADLLL 180
  181 LSSSYEDGIC YVETMNLDGE TNLKVKRCLD VTLPLERDDT FQSFSGTIKC EDPNPNLYTF 240
  241 VGNLEYDGQV YPLDPSQILL RDSKLRNTSY VYGVVVFTGH DTKVMQNSTK SPSKRSRIEK 300
  301 RMDYIIYTLF ALLVLVSFIS SLGFAVMTKM HMGDWWYLRP DKPERLTNPR NPFHAWVVHL 360
  361 ITAVLLYGYL IPISLYVSIE LVKVLQATFI NQDLQMYDSE SGTPAQARTS NLNEELGQVD 420
  421 TILSDKTGTL TCNQMDFLKC SIAGTSYGVR ASEVELAAAK QMAIDLDEEQ GEEVTHLPRT 480
  481 RGRMHGYAKM PSKTSSDIEL ETVITATDEG DQTQSTGIKG FSFEDQRLMG GNWLNEPNSD 540
  541 DILMFLRILA VCHTAIPEVD EDTGKCTYEA ESPDEVAFLV AAGEFGFEFT KRTQSSVFIS 600
  601 ERHSGQPVER EYKFLNVLDF TSKRKRMSVI VRDEKGQILL LCKGADSIIF ERLSKNGKNY 660
  661 LEATSKHLNG YGEAGLRTLA LSYRKLDETE YSIWNSEFHK AKTSVGADRD EMLEKVSDMM 720
  721 EKELILVGAT AVEDKLQKGV PQCIDKLAQA GLKIWVLTGD KMETAINIGY ACSLLRQGMK 780
  781 QIYIALRNEE GSSQDPEANL FVVSNGQAAR ENILMQIINA SQMIKLEKDP HAAFALIIDG 840
  841 KTLTYALEDD IKYQFLALAV DCASVICCRV SPKQKALVTR LAKEGTGKTT LAIGDGANDV 900
  901 GMIQEADIGV GISGVEGMQA VMASDFSIAQ FRFLERLLVV HGHWCYKRIA QMICYFFYKN 960
  961 ITFGLTLFYF EAFTGFSGQA IYNDSYLLLF NVILTSLPVI ALGVFEQDVS SEVCLQFPAL1020
 1021 YQQGPKNLFF DWYRIIGWMA NGVYASVVIF SLNIGIFHVQ SFCSGGQTAD MDAMGTAMFT1080
 1081 CIIWAVNVQI ALTMSHFTWI QHVLIWGSIV TWYIFLALFG MLPPKVSGNI FHMLSETLAP1140
 1141 APIFWLTSLL VIAATTLPYL AYISFQRSLN PLDHHIIQEI KHFRIDVQDE CMWTRERSKA1200
 1201 REKTKIGVTA RVDAKIRQLR GRLQRKHSIL SVMSGLSGVS ASTDTTSTTQ HS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle