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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50423985, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGSNLNHL SIREWKWYNL DYNDLKYKIR ILTQEDNYEI LELYQDFVNN FNRINLFIET  60
   61 KNDELIRKVT FFEANFNRLL EESNINTIVK QINFDEIFYQ TIEISVILKK LLKFITIQKI 120
  121 ACRKIFKKLV KYYANKTEAG QFVSSLKDKL SRNERSFINF SLANLTGRLT LLFNSIKVER 180
  181 GNLCQFVNEK SHIPRCKRTL LISLFHNTDD LEFDYNILLK KNFLMSCLIS ADVNNLNELF 240
  241 LNLNIYLGFN NCNVDKELTR MSYTYLFNDN MNDEPCTIIT HEDKKYSLII ACVGGLRKYS 300
  301 YCRIETDIAD SLLKYLIDPS KNEVLDKLPT LYDDNLTKAT IDLILNNKLS PKFRLICNRS 360
  361 RFSLLNEADL HQEPDTFHNP EDDYLITVDE GILTTSDINI VSSTSFDFDR THFERFPINK 420
  421 LSIYTNDLNL SNFEDNLTSE INNHKISNKF QISYLKKLPT RIQKLVQIHS LNLFKNLDLY 480
  481 QYMLSCYMNV IPNDKYIDNH YSVLLNLDLF KSFENIENYR NTLDIETKLI NSKSDQILRH 540
  541 QSSLKSLPDY YAKHTQPSER PLLSKSHQRN SLLSNNSSQT GLYTLHNLYS RENLNNSLTS 600
  601 HTSILNSDHS DEFDVDSELE YYDNNNIASM NYESGDSVIN KVILTIIQLK RKAYGVSRDV 660
  661 ESYGSTNERY NNYKKDPSIV IRSTFNEYQY QFERDFDKIL SFFYFSLIFI SLFISGVEIG 720
  721 IIYSILLSQL NFDRFPIVQN IWLILVIIIG LIVSSFLSLI SLLLIFRRFH SCPKSHYLVI 780
  781 TFGSFLIITS FFWCMFILFF 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle