YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50423253, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDIRHLRD SISENCSIYA LTSGTIAFQD YHNHSWSQNY TKYFLPAYYL TNCSIADLTD  60
   61 ISLLNNLHSY NLTKWEYGQR YHTYDKTDNG DAFVALLFTI SGTCVSCWML TLLMYLSPKH 120
  121 KRKPWLTQLA TVFYSILTTV ILSYITDESK MQYYADSLNL IQLHNLVYVS YSYRVMVVFS 180
  181 QFFTNLAWLQ IVVHVSKLKF KWYSMLVNLI LMLAYTVTHS IYEARYNNDD LIFNTTLDSP 240
  241 YQRWRLAIHI LKLLIMIWFA ASILYYTTII KNPRKICYSK KLFPLAISSL SLFVIHIVAN 300
  301 VLSMSLFLKD WQVRSWLILI SYLIEIGILT AIWEWVYGIE FLEKRYEIMG MLGRRISLND 360
  361 VISFNLYGNN EQPEKPDKPK QFINFLMKKI FRNKYFDHME YAEEVNNKDA VESSRSLESD 420
  421 LMQHQNMDVA DTQALHLPNT NVNNVNSTHN TENNNIISAE DEDIIDIHSN QSSGSYEDVY 480
  481 IDDYHFSDDE HNTTSSNTDE RLEHPQNNPP PFLPLPGFSH NDYWPDEK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.64
Transmembrane Helix	15	29	0.59
Non-Cytoplasmic	30	91	0.89
Transmembrane Helix	92	116	0.88
Cytoplasmic	117	124	0.93
Transmembrane Helix	125	145	0.95
Non-Cytoplasmic	146	170	0.91
Transmembrane Helix	171	192	0.87
Cytoplasmic	193	201	0.81
Transmembrane Helix	202	222	0.90
Non-Cytoplasmic	223	247	0.93
Transmembrane Helix	248	269	0.93
Cytoplasmic	270	281	0.91
Transmembrane Helix	282	304	0.85
Non-Cytoplasmic	305	315	0.80
Transmembrane Helix	316	337	0.91
Cytoplasmic	338	528	0.97