YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50422565, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDVFNIQIF FVLFRETLEG VVIISILLAF LKQGLAGPSN DAVVYKKLVR QVWFGTILGV  60
   61 VFCLIVGSIF IGIFYTVGSD VWQKSEDLWT GVFCMIASVL ISMMGIAMLR VNKMKEKWRI 120
  121 KIAQALLNVP EKKLDRFKLG YLTKKYCFFI LPFVTCIREG LEAVVFVGGV GLNRPVSSFP 180
  181 LPVICGLLAG IAVGFALYYW GSTISVQIFL IISTCILYLI ASGLFSRGVW YFETNTYNQK 240
  241 TGGDASENGS GPGTYDISKS VWHVNCCNPQ KDNGWDVFNA LLGWQNSATY GSVISYCVYW 300
  301 LCMIVVLLLM SYEEKHGHLP FSKNLTLAQL NPMYHIKGKK NNNLSRREKD ELFAKVKIKN 360
  361 IVISKNFDFE ESNSNISRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.74
Transmembrane Helix	12	31	0.74
Cytoplasmic	32	51	0.88
Transmembrane Helix	52	75	0.93
Non-Cytoplasmic	76	87	0.91
Transmembrane Helix	88	111	0.91
Cytoplasmic	112	145	0.96
Transmembrane Helix	146	168	0.84
Non-Cytoplasmic	169	178	0.77
Transmembrane Helix	179	200	0.94
Cytoplasmic	201	207	0.76
Transmembrane Helix	208	229	0.89
Non-Cytoplasmic	230	287	0.95
Transmembrane Helix	288	310	0.90
Cytoplasmic	311	379	0.96