YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50422481, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFKSFKKN QSNYSPLSQN DDGAPLPAPA TNSNNSTPNS FKTRLGKLNP FRNNSVYLED  60
   61 DENYVTSEPG YFELSRWDRM LIFGLTFAGS VSCYLICIFL FPILSLKPRK FALLWSLGSI 120
  121 FFLVSFGVLQ GFKAYMQHLF LSTRIIFTIV FVTSIILTLV SCLSLRSTLL SIIFAVIQLI 180
  181 SAIWYTVSYF PMGQQTLNLA GSVARSQVDG WIRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	80	0.57
Transmembrane Helix	81	104	0.92
Cytoplasmic	105	110	0.55
Transmembrane Helix	111	132	0.93
Non-Cytoplasmic	133	139	0.48
Transmembrane Helix	140	163	0.86
Cytoplasmic	164	167	0.50
Transmembrane Helix	168	189	0.87
Non-Cytoplasmic	190	214	0.56