YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1A2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI  60
   61 LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE KFIRTIRHFS PHMAAKMRPP 120
  121 HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH 180
  181 ASIRTPNLKA RLNTFREEFR AVWRNYSEL

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	71	0.93
Non-Cytoplasmic	72	76	0.75
Transmembrane Helix	77	98	0.88
Cytoplasmic	99	137	0.94
Transmembrane Helix	138	158	0.84
Non-Cytoplasmic	159	163	0.68
Transmembrane Helix	164	183	0.90
Cytoplasmic	184	209	0.89