YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSKACRGT RISSYLENLH RTSQYPRTIL CSRYYTHGAC KSNEHYLRSK RVFWGSSSSW  60
   61 SLNSHSATAK SMLDSAHRQY STHSPSETKS QKMLYYLTAV VFGMVGLTYA AVPLYRTFCQ 120
  121 ATGYGGTVQR KETVEEKIAR HSESGTVTER EIVVQFNADV ADGMQWKFTP TQREVRVKPG 180
  181 ESALAFYTAE NKSSAPITGV STYNVTPMKA GVYFNKIQCF CFEEQRLLPG EQIDMPVFFY 240
  241 IDPEFETDPR MDGINNLILS YTFFKVSEEN TTETVNNNNS VPVQETN

Type	Start	End	Confidence
Cytoplasmic	1	92	0.81
Transmembrane Helix	93	112	0.82
Non-Cytoplasmic	113	287	0.95