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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29028986, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRSCRTRRR VSVNKFNGRN SFYKVSLSLV FLLWVLLFFS TLLISHGDGA KDEPLDDSMG  60
   61 MADPDDGQSD EKVVPFDGPL SLASASVDVT SDLSRNDDVN LSEESEDKEQ EAEISSTVSG 120
  121 NDIESKDTYL LKQSEINKKD TGIDAGSKYD DFPKKSEINN TGTWNDTEGK DDNNFLKQSQ 180
  181 LNKTGTGNDT ESSDNEFLEQ NQMNKTVLGN GTEINVSKVD QPSRAVPLGL DEFKSRASNS 240
  241 RNKSLSDQVS GVIHRMEPGG KEYNYASASK GAKVLSSNKE AKGAASILSR DNDKYLRNPC 300
  301 STEGKFVVVE LSEETLVNTI KIANFEHYSS NLKEFELQGT LVYPTDTWVH MGNFTASNVK 360
  361 HEQNFTLLEP KWVRYLKLNF ISHYGSEFYC TLSLIEVYGV DAVERMLEDL ISVQDNKNAY 420
  421 KPREGDSEHK EKPMQQIESL EGDDGADKST HREKEKEAPP ENMLAKTEAS MAKSSNKLSE 480
  481 PVEEMRHHQP GSRMPGDTVL KILMQKLRSL DLNLSILERY LEELNLRYGN IFKEMDREAG 540
  541 VREKAIVALR LDLEGMKERQ EGMVSEAEEM KEWRKRVEAE MEKAEKEKEN IRQSLEQVSK 600
  601 RLEWMEKKCL TVFTVCLGFG IIAVIAVVIG MGTGLAEKTG SGAWLLLLIS STFIMFVLSL 660
  661 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle