YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51970138, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.51
Transmembrane Helix	55	74	0.74
Cytoplasmic	75	85	0.57
Transmembrane Helix	86	104	0.86
Non-Cytoplasmic	105	122	0.60
Transmembrane Helix	123	142	0.73
Cytoplasmic	143	155	0.55
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	189	0.55
Transmembrane Helix	190	209	0.60
Cytoplasmic	210	221	0.78
Transmembrane Helix	222	243	0.90
Non-Cytoplasmic	244	249	0.78
Transmembrane Helix	250	273	0.86
Cytoplasmic	274	287	0.88
Transmembrane Helix	288	310	0.90
Non-Cytoplasmic	311	339	0.77
Transmembrane Helix	340	360	0.83
Cytoplasmic	361	378	0.76
Transmembrane Helix	379	401	0.79
Non-Cytoplasmic	402	408	0.71
Transmembrane Helix	409	429	0.54
Cytoplasmic	430	438	0.57
Transmembrane Helix	439	458	0.78
Non-Cytoplasmic	459	818	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEEIDMSY WDVSWGEFNE DKNSSIFCES HPHIVNSHGI WEVMTFKRGM NFWEYPLPNL  60
   61 EILIFSTFFI WRLLDISFNK IGLRVPRFTY MMIAGIILGQ TCHFSNKSWI HDIFFPDDNR 120
  121 PKVAETLGAF GFVLYWFLKG VTMDAESPFR TEKRSSVIGF ITVIIPLICG SLTFRYRERR 180
  181 GDSSILRMEY RLIIFLQSIS AFTSIDTLLK DLQIKHSEFG RIALSGAMVT DMLAFGVTFF 240
  241 NAIYYEKLYG FMQTVGFCLF VVVMICVVRP AMYWVIKQTP EGRPVKDFYL YSIFGIAFAC 300
  301 FTFFNKVIHL FGPAGSFVFG LTVPNGYPLG TTLIQKFESF NLGSILPLFG SLTMMQVDLL 360
  361 RLFKESGDLI RMEGQIYEVI SFILLVNTTK FVVTTITAYA FKMPLRDSFA LALVLSNKGI 420
  421 FELAYYTYAV ELKLIRPEVF TILAAYTLLN SIFIPMLLEL VHDPTKRFRC YRKRNLGILK 480
  481 DGAALQCIMC VYRPDHITSM TDLLETFSPS QDSPMACNIL HLVELVGQAN PMFISHQLQK 540
  541 PEPGSTSLSD NVIISFRGFQ RQFFEYTSLD IFTSVSVSQH MHEDICWLAL SRSLSLIVLP 600
  601 FHRTWSVDRS TVISNDDNLR MLNVNVLRRA PCSVGIFVYR KPIVESHMAK SHSKICLIFN 660
  661 GGKDDREALA ITNRMRLTEK RTRLTIIRFI PKSSEMDNDE WEQQQSINLK ESVTSIVGSN 720
  721 IKENDAKVTY IDKAVSDGSE TSRILRAMAN DYDLFIVGSG SGIGTEATSG ISEWTEFNEL 780
  781 GPIGDLLASH EYPSSASVLV VQKQVYIHHT KSQRRKSF