YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SWET8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDAKQVRFI IGVIGNVISF GLFAAPAKTF WRIFKKKSVE EFSYVPYVAT VMNCMLWVFY  60
   61 GLPVVHKDSI LVSTINGVGL VIELFYVGVY LMYCGHKKNH RRNILGFLAL EVILVVAIIL 120
  121 ITLFALKGDF VKQTFVGVIC DVFNIAMYGA PSLAIIKVVK TKSVEYMPFL LSLVCFVNAG 180
  181 IWTTYSLIFK IDYYVLASNG IGTFLALSQL IVYFMYYKST PKEKTVKPSE VEISATERV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	31	0.85
Cytoplasmic	32	42	0.91
Transmembrane Helix	43	63	0.91
Non-Cytoplasmic	64	69	0.85
Transmembrane Helix	70	94	0.88
Cytoplasmic	95	103	0.93
Transmembrane Helix	104	126	0.94
Non-Cytoplasmic	127	133	0.88
Transmembrane Helix	134	156	0.90
Cytoplasmic	157	165	0.85
Transmembrane Helix	166	188	0.89
Non-Cytoplasmic	189	194	0.82
Transmembrane Helix	195	217	0.91
Cytoplasmic	218	239	0.99