YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WIP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF  60
   61 DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS KALKRGLSGV AHSHGKQMQF 120
  121 QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS 180
  181 STVARAPKVI RYEKPMISSG QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM 240
  241 MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ 300
  301 EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN 360
  361 QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ MKLIDEQESL AEEQTHETLN 420
  421 KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL 480
  481 PEPDTVVPT

Type	Start	End	Confidence
Cytoplasmic	1	459	0.66
Transmembrane Helix	460	480	0.66
Non-Cytoplasmic	481	489	0.93