YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ROT1_DEBHA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIFSFLVTF FILGAQVLGE NMKELVGTWS SKSNTVFTGP GFYDPVSELL IEPDLPGISY  60
   61 SFTEDGHYEE ALYRVTSNPK NHSCPTATLI YQHGTYEIKS NGSLFMTPIA VDGRQLLSDP 120
  121 CGVDTENDAS LYSRYVQKTW FKKFQVMVDS YNGRRKLQIY QFDGSPMQPL YLAYKPPMML 180
  181 PTSALNPTDS ASETKSSLRK RIKRSLENQY RTNARIETSS AKYEFWWWTA IAGIGLGSAV 240
  241 IFLH

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	224	0.98
Transmembrane Helix	225	243	0.82
Cytoplasmic	244	244	0.82