YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50420581, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIASSVAGH LMAIFAIIGI CVAAPFTPKN GKLVKKDSGF DYQNDKIRGV NLGGWFVLEP  60
   61 YMTPSLFQQN ADDGNIPVDE YHYCEKLGKD VCKQRLETHW DNWITEDDIA KISKLGLNMV 120
  121 RIPIGYWAYQ TLDSDPYVQG QDKYLKKALK WCRNHNVKVW IDLHGAPGSQ NGFDNSGLRD 180
  181 EYGFQSGDNT QITLDVLAQI LEKYGGSDYE DVVIGIELLN EPLGTVLDMD KLKTFFYGGY 240
  241 KTVRNSGVQT VVIHDAFQDM GFWNNDFNPP NKYWDVVVDH HHYQVFSQDD LEKSIDEHVE 300
  301 TVCQWGRSAT EESHWNVVGE WSAALTDCAT WLNGVGRGAR YSGDFDNTPY IGSCDNYLDY 360
  361 GSWSNDYRTN VRKYIEAQLD AYEQGAGWIF WSWKTENAVE WDFSRLTQAG IFPSPVTDRT 420
  421 YENQCGF

Type	Start	End	Confidence
Signal Peptide	1	23	0.73
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	427	0.92