YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	59	0.89
Non-Cytoplasmic	60	66	0.79
Transmembrane Helix	67	89	0.78
Cytoplasmic	90	107	0.72
Transmembrane Helix	108	130	0.93
Non-Cytoplasmic	131	149	0.89
Transmembrane Helix	150	172	0.84
Cytoplasmic	173	179	0.71
Transmembrane Helix	180	202	0.88
Non-Cytoplasmic	203	208	0.78
Transmembrane Helix	209	231	0.92
Cytoplasmic	232	251	0.94
Transmembrane Helix	252	270	0.91
Non-Cytoplasmic	271	287	0.77
Transmembrane Helix	288	311	0.82
Cytoplasmic	312	328	0.79
Transmembrane Helix	329	351	0.88
Non-Cytoplasmic	352	372	0.80
Transmembrane Helix	373	393	0.86
Cytoplasmic	394	402	0.71
Transmembrane Helix	403	424	0.91
Non-Cytoplasmic	425	432	0.81
Transmembrane Helix	433	457	0.88
Cytoplasmic	458	476	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLPRDE QLVSCKSTWQ SGQVTVELKK VSRLAAPMAT VTIAQYLLPV ISVMVAGHIG  60
   61 ELELAGVALA TSFTNVSGFS IMFGLVGALE TLCGQAYGAE QYEKIGTYTY SAMASNIPIC 120
  121 FIISILWIYI EKLLITLGQE PDISRVAGSY SLWLVPALFA HAIFLPLTRF LLAQGLVISL 180
  181 LYSAMTTLLF HIAVCWTLVF ALGLGSNGAA IAISLSFWFY AVILSCHVRF FSSCEKTRGF 240
  241 VSNDFMSSIK QYFQYGVPSA GLICLEWWLF ELLILCSGLL PNPKLETSVL SICLTIGTLH 300
  301 YVIPSGVAAA VSTRVSNKLG AGNPQVARVS VLAGLCLWLV ESAFFSTLLF TCRNIIGYTF 360
  361 SNSKEVVDYV ADISPLLCLS FILDGLTAVL NGVARGCGWQ HIGALINVVA YYLVGAPVGV 420
  421 YLAFSREWNG KGLWCGVMVG SAVQATLLAI VTASMNWKEQ AEKARKRIIS TENGLV