YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVASARSIS SHPSYYGKPI CSSQSSLIRI SRDKVCCFGR ISNGMTSFTT SLHAVPSEKF  60
   61 MGETRRTGIQ WSNRSLRHDP YRFLDKKSPR SSQLARDITV RADLSGAATP DSSFPEPEIK 120
  121 LSSRLRGIFF CVVAGISATF LIVLMIIGHP FVLLFDPYRR KFHHFIAKLW ASISIYPFYK 180
  181 INIEGLENLP SSDTPAVYVS NHQSFLDIYT LLSLGKSFKF ISKTGIFVIP IIGWAMSMMG 240
  241 VVPLKRMDPR SQVDCLKRCM ELLKKGASVF FFPEGTRSKD GRLGSFKKGA FTVAAKTGVA 300
  301 VVPITLMGTG KIMPTGSEGI LNHGNVRVII HKPIHGSKAD VLCNEARSKI AESMDL

Type	Start	End	Confidence
Cytoplasmic	1	126	0.93
Transmembrane Helix	127	149	0.92
Non-Cytoplasmic	150	219	0.82
Transmembrane Helix	220	242	0.86
Cytoplasmic	243	356	0.66