YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAAT_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSRFASRL RMAEEISKTK VGSSSTASVA DSSAAASAAT NAAKSRWKIL WPNSLRWIPT  60
   61 STDYIIAAEK RLLSILKTPY VQEQVSIGSG PPGSKIRWFR STSNESRYIN TVTFDAKEGA 120
  121 PTLVMVHGYG ASQGFFFRNF DALASRFRVI AIDQLGWGGS SRPDFTCRST EETEAWFIDS 180
  181 FEEWRKAQNL SNFILLGHSF GGYVAAKYAL KHPEHVQHLI LVGSAGFSAE ADAKSEWLTK 240
  241 FRATWKGAVL NHLWESNFTP QKLVRGLGPW GPGLVNRYTT ARFGAHSEGT GLTEEEAKLL 300
  301 TDYVYHTLAA KASGELCLKY IFSFGAFARK PLLQSASEWK VPTTFIYGMN DWMNYQGAVE 360
  361 ARKSMKVPCE IIRVPQGGHF VFIDNPIGFH SAVLYACRKF ISQDSSHDQQ LLDGLRLV

Type	Start	End	Confidence
Signal Peptide	1	38	0.90
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	418	0.99