YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRK10_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNTDQESP IMSYYSSFFF LFLFSFLTSF RVSAQDPTYV YHTCQNTANY TSNSTYNNNL  60
   61 KTLLASLSSR NASYSTGFQN ATVGQAPDRV TGLFNCRGDV STEVCRRCVS FAVNDTLTRC 120
  121 PNQKEATLYY DECVLRYSNQ NILSTLITTG GVILVNTRNV TSNQLDLLSD LVLPTLNQAA 180
  181 TVALNSSKKF GTRKNNFTAL QSFYGLVQCT PDLTRQDCSR CLQLVINQIP TDRIGARIIN 240
  241 PSCTSRYEIY AFYTESAVPP PPPPPSISTP PVSAPPRSGK DGNSKVLVIA IVVPIIVAVL 300
  301 LFIAGYCFLT RRARKSYYTP SAFAGDDITT ADSLQLDYRT IQTATDDFVE SNKIGQGGFG 360
  361 EVYKGTLSDG TEVAVKRLSK SSGQGEVEFK NEVVLVAKLQ HRNLVRLLGF CLDGEERVLV 420
  421 YEYVPNKSLD YFLFDPAKKG QLDWTRRYKI IGGVARGILY LHQDSRLTII HRDLKASNIL 480
  481 LDADMNPKIA DFGMARIFGL DQTEENTSRI VGTYGYMSPE YAMHGQYSMK SDVYSFGVLV 540
  541 LEIISGKKNS SFYQTDGAHD LVSYAWGLWS NGRPLELVDP AIVENCQRNE VVRCVHIGLL 600
  601 CVQEDPAERP TLSTIVLMLT SNTVTLPVPR QPGLFFQSRI GKDPLDTDTT SKSLLGSVDD 660
  661 ASITDIHPR

Type	Start	End	Confidence
Signal Peptide	1	34	0.59
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	285	0.92
Transmembrane Helix	286	309	0.90
Cytoplasmic	310	669	0.84