YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49653745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYIIDILLL DCRLKLHKLI LDMRFIEYYI PYNCHHTRLK IRDRIVMSLS QTPNHEIYDR  60
   61 HLQQLGKLGD SISRKIRLST GELIFLVSFI ANFFLGKLIH LTAEHEEVYN YYNNKRNVFN 120
  121 QVFVKRGWGW TTLIIVVFYS FLMYGNSHAR IRTKQQRISV LKKAIFNYVV ATLWWVLFTQ 180
  181 WCFGLPLMDK VFVWTGGKCT GIAQEKLALH IPSYGTSSIF TEIESDLSYE SKAITSYMCR 240
  241 KLKGSWEGGH DPSGHVFLLI HSSLYLFLEA LPFWISWATL KHHLCQFVKS WRLTSGSKPK 300
  301 LLFGLFAQDP HTIIIPLISL WWFMLFMTNI YFHSIGEKLV GLVFGYVGLA VVYYVPRWL

Type	Start	End	Confidence
Cytoplasmic	1	82	0.96
Transmembrane Helix	83	101	0.93
Non-Cytoplasmic	102	126	0.94
Transmembrane Helix	127	145	0.95
Cytoplasmic	146	163	0.88
Transmembrane Helix	164	184	0.92
Non-Cytoplasmic	185	256	0.97
Transmembrane Helix	257	280	0.87
Cytoplasmic	281	300	0.93
Transmembrane Helix	301	325	0.84
Non-Cytoplasmic	326	334	0.77
Transmembrane Helix	335	355	0.89
Cytoplasmic	356	359	0.74