YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGL1B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTLTIPRF SAISRKPITC SSSRTQCPAP FTHGRSISLR RRLTLLPLKA STDQSGQVGG  60
   61 EEVDSKILPY CSINKNEKRT IGEMEQEFLQ AMQSFYYEGK AIMSNEEFDN LKEELMWEGS 120
  121 SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY 180
  181 SDLAIDYFKM FLLNVPATVV ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV 240
  241 YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS 300
  301 GSRLITLPEG GKA

Type	Start	End	Confidence
Cytoplasmic	1	186	0.98
Transmembrane Helix	187	208	0.90
Non-Cytoplasmic	209	227	0.90
Transmembrane Helix	228	250	0.89
Cytoplasmic	251	313	0.98