YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827414, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKSSDSSH KQSPPSFRKS VEIKATHDQF FVWREFLWGG IAGAFGEGMM HPVDTLKTRL  60
   61 QSQIIMNATQ RQKSILQMLR TVWVGDGLKG FYRGIAPGVT GSLATGATYF GFIESTKKWI 120
  121 EESHPSLAGH WAHFIAGAVG DTLGSFIYVP CEVIKQRMQI QGTSSSWSSY ISRNSVPVQP 180
  181 RGDMYGYYTG MFQAGCSIWK EQGPKGLYAG YWSTLARDVP FAGLMVVFYE GLKDLTDQGK 240
  241 KKFPQYGVNS SIEGLVLGGL AGGLSAYLTT PLDVVKTRLQ VQGSTIKYKG WLDAVGQIWR 300
  301 KEGPQGFFRG SVPRVMWYLP ASALTFMAVE FLRDNFREKS NNNNNVVSNL SIERKTSSTS 360
  361 VHEG

Type	Start	End	Confidence
Cytoplasmic	1	89	0.67
Transmembrane Helix	90	113	0.73
Non-Cytoplasmic	114	129	0.73
Transmembrane Helix	130	151	0.74
Cytoplasmic	152	250	0.66
Transmembrane Helix	251	268	0.39
Non-Cytoplasmic	269	314	0.60
Transmembrane Helix	315	332	0.40
Cytoplasmic	333	364	0.52