YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26450310
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.79
Transmembrane Helix	65	86	0.77
Non-Cytoplasmic	87	92	0.54
Transmembrane Helix	93	113	0.83
Cytoplasmic	114	117	0.70
Transmembrane Helix	118	138	0.75
Non-Cytoplasmic	139	147	0.77
Transmembrane Helix	148	166	0.95
Cytoplasmic	167	173	0.65
Transmembrane Helix	174	196	0.83
Non-Cytoplasmic	197	225	0.89
Transmembrane Helix	226	246	0.90
Cytoplasmic	247	253	0.91
Transmembrane Helix	254	275	0.85
Non-Cytoplasmic	276	302	0.89
Transmembrane Helix	303	326	0.76
Cytoplasmic	327	339	0.72
Transmembrane Helix	340	359	0.80
Non-Cytoplasmic	360	374	0.63
Transmembrane Helix	375	394	0.91
Cytoplasmic	395	402	0.49
Transmembrane Helix	403	425	0.82
Non-Cytoplasmic	426	441	0.56
Transmembrane Helix	442	464	0.88
Cytoplasmic	465	661	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAVKIIPL QYPDSTSSDP HCHSIPFNDF FSRWTAKIKR MTFFDWIDAI FPCFLWIRTY  60
   61 RWHQYFKLDL MAGITVGIML VPQAMSYARL AGLQPIYGLY SSFVPVFVYA VFGSSRQLAV 120
  121 GPVALVSLLV SNALSGIVDP SEELYTELAI LLALMVGIFE SIMGFLRLGW LIRFISHSVI 180
  181 SGFTTASAVV IGLSQLKYFL GYSVSRSSKI MPVIDSIIAG ADQFKWPPFL LGCTILVILL 240
  241 VMKHVGKAKK ELRFIRAAGP LTGLALGTII AKVFHPPSIT LVGDIPQGLP KFSFPKSFDH 300
  301 AKLLLPTSAL ITGVAILESV GIAKALAAKN RYELDSNSEL FGLGVANIFG SLFSAYPTTG 360
  361 SFSRSAVNSE SEAKTGLSGL VTGIIIGCSL LFLTPMFKFI PQCALAAIVI SAVSGLVDYE 420
  421 GAIFLWRVDK RDFTLWTITS TTTLFFGIEI GVLIGVGFSL AFVIHESANP HIAVLGRLPG 480
  481 TTVYRNMKQY PEAYTYNGIV IVRIDAPIYF ANISYIKDRL REYEVAIDKH TSKGPDMERI 540
  541 YFVILEMSPV TYIDSSAVEA LKDLYEEYKT RGIQLAISNP NKEVLLTLAR AGIVELIGKE 600
  601 WFFVRVHDAV QVCVHYVNRP TDVEESSKPS LWRRSGLKNS STYTEVESNI VLEEPLLSRE 660
  661 K