YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18390936, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILTLVMLL CYSFVSSTGD TTIHTNNWAV LVCTSRFWFN YRHMANTLSL YRTVKRLGIP  60
   61 DERIILMLAD DMACNARNEY PAQVFNNENH KLNLYGDNVE VDYRGYEVTV ENFLRVLTGR 120
  121 HENAVPRSKR LLSDEGSHIL LYMTGHGGDE FLKFQDAEEL QSHDLADAVK QMKEKRRFKE 180
  181 LMIMVDTCQA ATLFNQLQSP GVLAIGSSLK GENSYSHHLD SDIGVSVVDR FTYYTLAFFE 240
  241 RLNIYDNASL NSLFRSYDPR LLMSTAYYRT DLYQPHLVEV PVTNFFGSVM ETIHTDSAYK 300
  301 AFSSKISERK INSEMPFNQL SEHDLKEELE NTNIPNDELI AEKQKCPYSQ MRADLHEKVE 360
  361 KLENVDTVVN LSIAVMVLAV MVSSSLLR

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	388	0.98