YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50418889, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSTAKAAN PLVQKFIAGS VGVTGLTASY LLYQDSVTAS AMTAAEHGLH PPAYGWSHNG  60
   61 MFDTFDHASI RRGYQVYQEV CAACHSLERI AWRNLVGVSH TTTEAKAFAE DLEYDDEPDD 120
  121 EGKPRKRPGK LADYIPSPYE NEQAARAANQ GALPPDLSLI VKARHGGCDY IFSLLTGYPD 180
  181 DPPAGVVLPE GSNYNPYFPG GAIAMARVLF DDLVEYEDGT PATTSQMAKD VTTFLNWASE 240
  241 PEHDDRKKWG LKALIIVSSL YLVSVWVKKF KWQPIKNRKI RFDPPSKRK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.42
Transmembrane Helix	12	29	0.41
Non-Cytoplasmic	30	289	0.91