YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26449931, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	163	0.86
Transmembrane Helix	164	184	0.76
Non-Cytoplasmic	185	188	0.82
Transmembrane Helix	189	208	0.93
Cytoplasmic	209	231	0.80
Transmembrane Helix	232	256	0.79
Non-Cytoplasmic	257	274	0.81
Transmembrane Helix	275	298	0.80
Cytoplasmic	299	305	0.75
Transmembrane Helix	306	327	0.94
Non-Cytoplasmic	328	344	0.82
Transmembrane Helix	345	366	0.85
Cytoplasmic	367	376	0.85
Transmembrane Helix	377	401	0.90
Non-Cytoplasmic	402	421	0.93
Transmembrane Helix	422	444	0.86
Cytoplasmic	445	461	0.89
Transmembrane Helix	462	484	0.89
Non-Cytoplasmic	485	488	0.64
Transmembrane Helix	489	510	0.91
Cytoplasmic	511	518	0.91
Transmembrane Helix	519	541	0.94
Non-Cytoplasmic	542	550	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN  60
   61 LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA SSFQKKQQSS FCDSLSSSSS 120
  121 KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM 180
  181 PYAIKESGWL GLPILLFFGV ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITGRFIISI 240
  241 LLYVELYAAC VEYIIMMSDN LSGLFPNVSL SIASGISLDS PQIFAILTTL LVLPTVWLKD 300
  301 LSLLSYLSVG GVLASILLGI CLFWVGAVDG IGFHATGRVF DLSNLPVTIG IFGFGYSGHS 360
  361 VFPNIYSSMK DPSRFPLVLV ICFSFCTVLY IAVAVCGYTM FGEAVESQFT LNMPKHFFPS 420
  421 KVAVWTAVIT PMTKYALTIT PIVMSLEELI PTAKMRSRGV SILFRTMLVT STLVVALSVP 480
  481 FFAIVAALIG SFLAMLVALI FPCLCYLSIL KGKLSNTQIG LCIFIIVFGV VSGCCGTYSA 540
  541 ISRLANQMTD