YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124301076, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVPVRPLP LLRRNITSTT ASKSSPMLAN VSSRHSLGIS TYDEFLKQIK TPATVNHRRR  60
   61 VSTVVASAGN LTAPSWDSWK PDKTAAATAL LLSDVIWPAA GAFAAMALLG RMDQMLSPKG 120
  121 ISMSVAPLGA VSAILFITPS APAARKYNIF LAQIGCAAIG VVAFSVFGPG WLARSVALAA 180
  181 SIAFMVITRA NHPPAASLPL MFIDGAKFHH LNFWYALFPG AAACVILCLL QSIVCYLKEN 240
  241 MKF

Type	Start	End	Confidence
Cytoplasmic	1	85	0.79
Transmembrane Helix	86	109	0.84
Non-Cytoplasmic	110	119	0.49
Transmembrane Helix	120	139	0.92
Cytoplasmic	140	148	0.49
Transmembrane Helix	149	183	0.75
Non-Cytoplasmic	184	212	0.51
Transmembrane Helix	213	237	0.87
Cytoplasmic	238	243	0.69