YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FD_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL  60
   61 VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN QNPNSIFQDF LKGSLNQEPA 120
  121 PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH 180
  181 HLSNAHAFNT SFEALVPSSS FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN 240
  241 ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Type	Start	End	Confidence
Signal Peptide	1	40	0.81
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	285	0.99