YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55925496, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWLSLEVLL GGVSQYSTVF GRVYLSVVFI FRILVFVVSV QQVWNDEQKD FICNTAQPGC  60
   61 TNVCYDQFFP ISHIRLWALQ LIFVTCPSLM VVAHVKYRQM KNVKYNTARN GENMYANPGR 120
  121 KRGGLWYTYI LSLLFKAGFD AAFLYILYYL YKFDMPNVTK CTAEPCPNTV DCYISRPTEK 180
  181 KIFTLFMVVS SSVCIFMCIC EMVYLITKKA GKFLHKKSEE NRNYISRRVD PTAMSNQNLN 240
  241 NLKMAQAAEE LKNSEMIHSE LNKLYER

Type	Start	End	Confidence
Cytoplasmic	1	19	0.86
Transmembrane Helix	20	38	0.91
Non-Cytoplasmic	39	75	0.91
Transmembrane Helix	76	95	0.93
Cytoplasmic	96	124	0.95
Transmembrane Helix	125	147	0.92
Non-Cytoplasmic	148	182	0.96
Transmembrane Helix	183	206	0.92
Cytoplasmic	207	267	0.98